Short label for this DockQ run; appears in dashboard and job history; doesn’t affect scoring.
Reference (native) complex as PDB or CIF/mmCIF. DockQ will score the model against this file.
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Predicted/model complex as PDB or CIF/mmCIF. May differ in format from the native file.
Drop or click to upload.
Infers chain correspondence between native and model by sequence/geometry. Turn off to map manually when inference is wrong or ambiguous.
Manual chain order for the native complex as a single string (e.g., “ABC”). Defines the reference mapping when auto-map is off.
Chain order of the model to align with the native (e.g., “CAB”). Must match lengths; affects per-chain mapping and the final DockQ score.